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An Improved Implementation of Codon Adaptation Index
An Improved Implementation of Codon Adaptation Index

Viruses | Free Full-Text | Evolution of Codon Usage Bias in Henipaviruses Is Governed by Natural Selection and Is Host-Specific
Viruses | Free Full-Text | Evolution of Codon Usage Bias in Henipaviruses Is Governed by Natural Selection and Is Host-Specific

Specific Codons Control Cellular Resources and Fitness | bioRxiv
Specific Codons Control Cellular Resources and Fitness | bioRxiv

MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding - Rodriguez - 2018 - Protein Science - Wiley Online Library
MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding - Rodriguez - 2018 - Protein Science - Wiley Online Library

Gene analysis
Gene analysis

Codon bias confers stability to human mRNAs | EMBO reports
Codon bias confers stability to human mRNAs | EMBO reports

Evolutionary responses to codon usage of horizontally transferred genes in Pseudomonas aeruginosa: gene retention, amelioration
Evolutionary responses to codon usage of horizontally transferred genes in Pseudomonas aeruginosa: gene retention, amelioration

Codon optimality has minimal effect on determining translation efficiency in mycobacterium tuberculosis | Scientific Reports
Codon optimality has minimal effect on determining translation efficiency in mycobacterium tuberculosis | Scientific Reports

Codon-based indices for modeling gene expression and transcript evolution - ScienceDirect
Codon-based indices for modeling gene expression and transcript evolution - ScienceDirect

Codon adaptation index (CAI) (A), relative codon deoptimization index... | Download Scientific Diagram
Codon adaptation index (CAI) (A), relative codon deoptimization index... | Download Scientific Diagram

SciELO - Brasil - NS1 codon usage adaptation to humans in pandemic Zika virus NS1 codon usage adaptation to humans in pandemic Zika virus
SciELO - Brasil - NS1 codon usage adaptation to humans in pandemic Zika virus NS1 codon usage adaptation to humans in pandemic Zika virus

Relative Codon Adaptation Index, a Sensitive Measure of Codon Usage Bias - Soohyun Lee, Seyeon Weon, Sooncheol Lee, Changwon Kang, 2010
Relative Codon Adaptation Index, a Sensitive Measure of Codon Usage Bias - Soohyun Lee, Seyeon Weon, Sooncheol Lee, Changwon Kang, 2010

Distinct responses to rare codons in select Drosophila tissues | eLife
Distinct responses to rare codons in select Drosophila tissues | eLife

TUTORIAL
TUTORIAL

VectorBuilder] Codon Optimization tool 무료 사용! > BRIC
VectorBuilder] Codon Optimization tool 무료 사용! > BRIC

Bioinformatics and Translation Elongation | SpringerLink
Bioinformatics and Translation Elongation | SpringerLink

Distinct responses to rare codons in select Drosophila tissues | eLife
Distinct responses to rare codons in select Drosophila tissues | eLife

RCA – Erill Lab - UMBC
RCA – Erill Lab - UMBC

Codon usage clusters correlation: towards protein solubility prediction in heterologous expression systems in E. coli | Scientific Reports
Codon usage clusters correlation: towards protein solubility prediction in heterologous expression systems in E. coli | Scientific Reports

Observed (Phosphorimage) protein levels vs. Codon Adaptation Index (CAI)
Observed (Phosphorimage) protein levels vs. Codon Adaptation Index (CAI)

Analysis of synonymous codon usage patterns in sixty-four different bivalve species [PeerJ]
Analysis of synonymous codon usage patterns in sixty-four different bivalve species [PeerJ]

Discovering the codon bias - ppt download
Discovering the codon bias - ppt download

A large-scale analysis of codon usage bias in 4868 bacterial genomes shows association of codon adaptation index with GC content, protein functional domains and bacterial phenotypes - ScienceDirect
A large-scale analysis of codon usage bias in 4868 bacterial genomes shows association of codon adaptation index with GC content, protein functional domains and bacterial phenotypes - ScienceDirect

Specific Codons Control Cellular Resources and Fitness
Specific Codons Control Cellular Resources and Fitness

Calculating and comparing codon usage values in rare disease genes highlights codon clustering with disease-and tissue- specific hierarchy | PLOS ONE
Calculating and comparing codon usage values in rare disease genes highlights codon clustering with disease-and tissue- specific hierarchy | PLOS ONE

CAIcal: A combined set of tools to assess codon usage adaptation | Biology Direct | Full Text
CAIcal: A combined set of tools to assess codon usage adaptation | Biology Direct | Full Text